Travel tips for...
Japan


Akane

A famous spot that the Ghibli scene is base on is Yakushima island in Kagoshima Pref. http://www.japan-guide.com/e/e4650.html
L
earn more about Kagoshima here: https://planetyze.com/en/japan/kagoshima

Something closer to Tokyo, there is the Noumizo Waterfall that is said to look like a scene out of a Ghibli movie. http://grapee.jp/en/45398

The Sayama Hills in Saitama Pref. are called Totoro Hills as that's the basis of the scenes from the movie Totoro. http://www.bring-you.info/totoro-forest

I don't know of any nature based tourist routes, sorry. But I believe those are good routes you can take!

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